msBayes
Uses hierarchical approximate Bayesian computation (HABC) for comparative (multi-taxa) phylogeographic inference. HABC allows testing hypotheses and estimating hyper-parameters that quantify levels and patterns of congruence across co-distributed taxon-pairs in divergence/colonization times and/or categorical biogeographic histories (i.e. recent colonization/expansion vs range stability). For more information and download go to the msBayes website.
Contributors also include Naoki Takebayashi, Wen Huang, and Eli Stahl.